Lunch & Learn: Faculty Use of High Performance Computing with Jeroen Tromp

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Fac­ulty are tak­ing full advan­tage of Princeton’s TIGRESS High-Performance Com­put­ing Cen­ter.
Pro­fes­sor Jeroen Tromp, the Blair Pro­fes­sor of Geol­ogy and Pro­fes­sor of Applied & Com­pu­ta­tional Math­e­mat­ics came to Prince­ton in July from Cal­tech. Among his many awards, he received the John von Neu­mann Prize in Super­com­put­ing in 1988, the Gor­don Bell Award in Super­com­put­ing in 2003) and the Medal of the Ven­ing Meinesz Research School of Geo­physics in 2004.


In “Sim­u­lat­ing the Big One” at the Octo­ber 22 Lunch ‘n Learn, Tromp illus­trated what we can do today to sim­u­late waves that are gen­er­ated from earth­quakes. He showed off large-scale 3D numer­i­cal sim­u­la­tions of seis­mic waves gen­er­ated by real and hypo­thet­i­cal earth­quakes and the result­ing response of dif­fer­ently engi­neered struc­tures.
Tromp explained that earth­quakes gen­er­ate com­pres­sional (acoustic) waves and shear waves that move through solids albeit at slower speeds, usu­ally on the order of 5–6 kilo­me­ters per sec­ond. But when such waves hit sed­i­men­tary areas like the Los Ange­les basin, the waves slow down con­sid­er­ably and the motions get ampli­fied. The result, for those on the ground, is a longer dura­tion event and far greater shak­ing.
He showed an ani­ma­tion of an earth­quake that occurred on June 12, 2005, a 5.1 mag­ni­tude event in Big Bear. The ani­ma­tion showed the waves radi­at­ing away from the epi­cen­ter, and illus­trated the up and down motion of the ground using red for up and blue for down­ward motion.
A South­ern Cal­i­for­nia Seis­mic Net­work (SCSN) now records such ground motion through­out the year. The data is avail­able to the pub­lic.
JeroenTromp.jpgHe then illus­trated how the shock­waves would affect a typ­i­cal 17 story steel office struc­ture in a the­o­ret­i­cal 7.9 earth­quake, the esti­mated size of the 1857 San Andreas rup­ture. The shak­ing from such an event would last about a minute and a half. The sim­u­la­tions now incor­po­rate the kinds of ground motion that you might expe­ri­ence in the LA basin owing to an earth quake.
He also pro­duced a three dimen­sional sim­u­la­tion of an 18 story steel frame struc­ture, a build­ing iden­ti­cal to one that was severely dam­aged dur­ing the North­ridge quake, as well as com­pa­ra­ble build­ing redesigned accord­ing to today’s stan­dards.
He explained that the dan­ger for such a struc­ture is that if you move one story too much rel­a­tive to its neigh­bor­ing story, the entire build­ing can pan­cake. The redesigned build stays up, but it nonethe­less can develop a per­ma­nent kink, what actu­ally hap­pened to the build­ing dur­ing the North­ridge quake. After the quake, the ele­va­tors would no longer run because the shafts were out of align­ment. He hopes that more build­ings in South­ern Cal­i­for­nia will be instru­mented to aid in our under­stand­ing of the impact of the waves on dif­fer­ent types of struc­tures.
Such sim­u­la­tions can help to guide future design and bud­getary con­sid­er­a­tions.
Cal­tech shares shake­movies. After each event of mag­ni­tude 3.5 or greater, they gen­er­ated an ani­ma­tion of the earth­quake at shakemovie.caltech.edu. There, you can even sign up for e-mail alerts. He noted that efforts are under way to mir­ror the shake­movie site here at Prince­ton and to begin a new site that will pro­vide com­pa­ra­ble data for the entire globe for events of mag­ni­tude 5.5 or greater. Such efforts are use­ful, he empha­sizes, for under­stand­ing events like the earth­quake off Suma­tra, which gen­er­ated not only a huge tsunami but also waves that repeat­edly cir­cled the entire globe.
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Ana­toly Spitkovsky received his PhD from the Uni­ver­sity of Cal­i­for­nia (Berke­ley), worked as a post-doctoral fel­low at Stan­ford, and received the Sloan Fel­low­ship in 2007. Since 2006 an Assis­tant Pro­fes­sor in Princeton’s Astro­phys­i­cal Sci­ences depart­ment, Spitkovsky pre­sented “Sim­u­la­tions of Astro­phys­i­cal Shocks,” first-principles plasma sim­u­la­tions of shock waves in astro­physics. His work seeks to address a very simple-sounding prob­lem — what hap­pens when two clouds of ion­ized gas col­lide in space?
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On earth, most shocks are medi­ated by phys­i­cal col­li­sions that involve den­sity, tem­per­a­ture, and pres­sure changes. In space, although the shocks are fun­da­men­tally col­li­sion­less (a much, much longer path between par­ti­cle con­tact than on earth), shocks still form and result in decel­er­a­tion of super­sonic flows on scales much smaller than mean free path. Spitkovsky used the Princeton’s high-performance com­put­ing facil­i­ties to sim­u­late col­li­sions between two clouds of plasma in order to under­stand the physics that dri­ves col­li­sion­less shocks.
In astro­physics, shock waves span a wide range of veloc­i­ties. There are rel­a­tively slow solar winds at a few hun­dred kilo­me­ters per sec­ond col­lid­ing with the sur­round­ing inter­stel­lar medium, and explod­ing super­novae whose rem­nants travel at a few thou­sands of kilo­me­ters per sec­ond. By con­trast, jets from a galac­tic nucleus would travel at rel­a­tivis­tic speeds, close to the speed of light.
Of inter­est, says Spitkovsky, all of these shock waves appear to be related. They all decel­er­ate super­sonic flows, with­out col­lid­ing, and man­age to accel­er­ate par­ti­cles out of ther­mal equi­lib­rium. They also seem to be able to amplify mag­netic fields. Where there are no mag­netic fields, the shocks cre­ate them from scratch.
His sim­u­la­tions involved hypo­thet­i­cal, rel­a­tivis­tic waves pass­ing through each other. With­out col­li­sions, one might have expected no effect. But indeed, shock waves are cre­ated and mag­netic fields appear due to plasma insta­bil­i­ties. An impor­tant result also emerged: some par­ti­cles were self-consistently accel­er­ated in sim­u­la­tions, and gain energy by repeat­edly cross­ing the shock front. These par­ti­cles are respon­si­ble for the high-energy emis­sion observed in astro­phys­i­cal shocks, like super­nova rem­nants and jets from active galax­ies.
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Spitkovsky’s use of Princeton’s high-performance com­put­ing facil­i­ties involves code par­al­leliza­tion. The longest run involved two months on Wood­hen (256 cpus). His con­clu­sion? The avail­abil­ity of such resources imme­di­ately has an impact on sci­ence, espe­cially in prob­lems where the explo­ration of dif­fer­ent regimes requires fast turn­around, very dif­fi­cult to obtain at much larger national cen­ters. Uni­ver­sity researchers inter­ested in using these facil­i­ties should con­tact , Director of the TIGRESS High-Performance Computing Center and Computational Science and Engineering within OIT’s Academic Services.
A podcast is available.

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