PubMed Central: Visualizing a Historical Treasure Trove

By Tyler Nix, Kathryn Funk, Jeffrey S. Reznick, and Erin Zellers

“A wealth of medical history awaits your exploration in the National Library of Medicine’s (NLM) free and full-text digital archive of journals PubMed Central (PMC)! Known to most of its users as a free, full-text archive of recent biomedical journals, PMC also reaches back in time over two centuries.

An account of centralized health and relief agencies in Massachusetts during the 1918 influenza pandemic; an article by Florence Nightingale on nursing reform; a paper by W. H. R. Rivers on his treatment of “war neuroses” during World War I; a medical case report on America’s 20th president James A. Garfield, following his assassination in 1881; post-World War II thoughts about the future of the Army Medical Library by its director Frank Rogers; and seminal historical research articles aplenty: by Sir Alexander Fleming, on the use of penicillin to fight bacterial infections; by Walter Reed, on the transmission of yellow fever by mosquitoes; and by the bacteriologist Ida A. Bengtson, the first woman to work in the Hygienic Laboratory of the U.S. Public Health Service, the forerunner of the National Institutes of Health.”

Photos, and the article continues here:

http://circulatingnow.nlm.nih.gov/2016/02/23/pubmed-central-visualizing-a-historical-treasure-trove/  from 1809+

From NLM Office Of Communications <NLM_OfficeOfCommunications@public.govdelivery.com> 2/23/16

NSF Special Report: Understanding the Brain

  • http://www.nsf.gov/news/special_reports/brain/“In 2013, President Obama unveiled “The Brain Initiative,” a ten-year, nearly one billion dollar effort to unlock the mysteries of the brain. With contributions by everyone from the National Institutes of Health (NIH) to the National Science Foundation (NSF) to Google, the initiative focuses on diverse fields and research methodologies. Readers will find much to explore on this accompanying website from NSF, including several dozen beautifully produced videos designed for classroom use. The videos, most of which are about five-minutes in length, cover topics such as the thinking brain, the perceiving brain, brain states and consciousness, the evolving brain, the emotional brain, the effects of musical training on the brain, and interviews with a number of groundbreaking brain researchers. Additionally, readers may peruse information about the brain initiative on the site, including Funding, Events, Resources, and News related to the project.”[CNH]
  • Source:  Scout Report, Univ. of Wisc., 7/17/2015, Vol. 21 (27)

Petition for Public Access to all Publicly-funded Research

ASU (Arizona State University) Libraries have posted a concise piece about Open Access to scholarly research in ” The Library Channel” newsletter:  http://lib.asu.edu/librarychannel/2012/05/21/petition/

There is a video and a link to more information as well as the petition at http://www.whitehouse.gov

Freely share the data and the knowledge!

 

National Library of Medicine adopts auto-complete feature

  “*NLM Technical Bulletin, Nov-Dec 2011, Search Auto-Complete Feature Added to NLM Main Web Site, MedlinePlus and MedlinePlus en Español

  http://www.nlm.nih.gov/pubs/techbull/nd11/nd11_mplus_auto_complete.html “

From NLM New files for the week of Nov 7, 2011

NLM-ANNOUNCES@LIST.NIH.GOV

National Institutes of Health: Research Matters

 

National Institutes of Health: Research Matters

http://www.nih.gov/researchmatters/

“The National Institutes of Health (NIH) generates thousands of pieces of important research every year, and even the most dedicated individual would be hard pressed to keep track of all these items. The Research Matters site from NIH makes this all a snap, as users can peruse the latest news releases from their many different research divisions. To get started, first-time visitors may want to look at the “Editor’s Picks”, which have included pieces like “Aspects of Aging Might be Reversed” and “Controlling Computers with Your Mind”. There’s also a search engine on the homepage, and visitors can subscribe to their RSS feed or sign up for regular email updates. On the left-hand side of the homepage, visitors will find “Quick Links” to multimedia features, the “News in Health” newsletter, and various podcasts.”

The update is weekly, and one can subscribe.Source:  Today’s Scout Report, Univ. of Wisconsin 

Database of Genomic Structural Variation (dbVar)

 

From NIH News: “The National Institutes of Health today announces the launch of a new resource, called the Database of Genomic Structural Variation, or dbVar, to help scientists understand how differences in DNA contribute to human health and disease.”.

Thanks to Tara Calishain and her newsletter, ResearchBuzz, October 4, 2010

OSTI, the science & technology portal of the U.S. Government

OSTI, the Office of Science and Technology Information is worth bookmarking.  It serves as a portal for most of the federal goverment’s information, reports and data for 18 agencies:

Agriculture,Commerce, Defense, Education, Energy, Health & Human Services, Interior, Transportation, Environmental Protection Agency, Library of Congress, National Aeronautics & Space Administration, National Archives & Records Adminstration, National Science Foundation, and the US Government Publications Office.

Terminology and thesauri might help in your information searches.

This site is a gateway to DOE collections at ScienceAccelerator.gov, global science via WorldWideScience.org, scientific research data as an open government initiative, and the OSTIblog.

Much of this, they declare, is outside Google’s purview — in the “deep web.”

Scientific Research support: funding and collaboration tools

"The NIH grabbed $10 billion of taxpayers’ funds funneled through the stimulus bill, and NIH chief Francis Collins says the money was used to save or create 50,000 research jobs. In many cases, he adds, the extra funds have kept America’s scientists in American labs." 

– here’s the story from Bloomberg

From FierceBiotech Research [editors@fiercebioresearcher.com]  1/5/10, by John Carroll

_____________________________________________________________

 

"National networking provides opportunities for scientists to collaborate in new, exciting ways to improve abilities to uncover underlying pathways and mechanisms of biology and to develop new diagnostics, treatments and prevention strategies," said NCRR Director Barbara Alving, M.D. "The infrastructure created and implemented through these awards has the potential to greatly facilitate the pace of biomedical research nationwide."

– here’s the NIH release
– check out a list of project partner institutions here   — besides Harvard and U of Florida

Read more: http://www.fiercebiotechresearch.com/story/nih-seeds-scientific-networking-projects-27m/2009-11-02?utm_medium=nl&utm_source=internal#ixzz0bxKR7UYy
 

Also from FierceBiotech Research [editors@fiercebioresearcher.com] 11/2/09, by John Carroll

U.S. Government invites comments on Open Access Policy

 US US government launches interactive public forum on Public Access Policy11 Dec 2009

"The US’ Office of Science and Technology Policy (OSTP) has launched a public consultation on its Public Access Policy. The Administration is seeking public input on access to publicly-funded research results, such as those that appear in academic and scholarly journal articles. Currently, the National Institutes of Health (NIH) require that research funded by its grants be made available to the public online at no charge within 12 months of publication. The Administration is seeking views as to whether this policy should be extended to other science agencies and, if so, how it should be implemented.

OSTP launched an interactive, online discussion on December 10. The discussion is focused on three major areas of interest. These include: Implementation (Dec. 10 to 20): Which Federal agencies are good candidates to adopt public access policies? What variables (field of science, proportion of research funded by public or private entities, etc.) should affect how public access is implemented at various agencies, including the maximum length of time between publication a public release?; Features and Technology (Dec. 21 to 31): In what format should the data be submitted in order to make it easy to search and retrieve information, and to make it easy for others to link to it? Are there existing digital standards for archiving and interoperability to maximise public benefit? How are these anticipated to change; and Management (Jan. 1 to 7): What are the best mechanisms to ensure compliance? What would be the best metrics of success? What are the best examples of usability in the private sector (both domestic and international)? Should those who access papers be given the opportunity to comment or provide feedback?

Each of these topics will form the basis of a blog posting that will appear at www.whitehouse.gov/open and will be open for comment on the OSTP blog.

Search for more Public funded research information in K-Store"

Source: Knowledgespeak Newsletter
 

Indiana Univ. to use cloud computing in life science research

From today’s Fiercebiotech News, FierceBiotech IT [editors@fiercebiotechit.com]

By George Miller
"… Indiana University is spending $1.5 million from the National Institutes of Health on…high-end computing discovery tools. The Hoosiers’ Pervasive Technology Institute Digital Science Center is targeting cloud computing to support life science research.
In addition to busting computing bottlenecks, the center plans to use the cloud for analyzing sequencing data, the volume of which is "one to two orders of magnitude larger than possible with current computational capabilities," according to an industry article. Amazon Web Services, Microsoft Azure, and other open source software are expected to be part of the installation.
The center’s research team will partner with IU life science research teams to test the platform in such research areas as sequence assembly and population genomics. Cloud technologies will also be applied to gene family clustering and structural visualization.
The IU work is also supported by the National Science Foundation via its FutureGrid experimental supercomputing network project."
– see the article

There are other interesting stories too:

Pitt hits computing jackpot
Hoosiers tap cloud for sequencing
Nano, in vivo 3D gains for imaging
Remote imager to provide disease data

 click here to read it on the web.. or here:

http://www.uptilt.com/functions/message_view.html?mid=2164839&mlid=125589&siteid=8121&uid=4a81392a19